rs47589538 SNP Detail

Summary

• ID
  rs47589538
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:151475017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTTAAGA ACCAGTGTAC
  CTTAGAACCA GTGTACTTGC CTAGCCTTCT TATTTTTCTT CTGTATTAAA AGTCTGGTGT
  TTGCTTGGAC AAAATACATT CAGACTCAGC ACTCCCTTGT GTTTGTCAAT TCTTGTCGAC
  TCTTTGCCCA TCTGTCTGAA ACCCTGATTC CACAAGGAAT GAGTGAGGCT GACTGGGCCC
  A
  GTCTGTGGCA GTAGAGCACT TTGAATGTTA TAAAAATCAT AAATGTACTT ATTTTATCAA
  TACATGAACC CATAGATGAG TTCTTTACTG AACATGCTGT TAGAAAGTAG TATGTAGATG
  GCGGAAGCAG GCCACTGGTA ATGGACCTTG GAAGACTTTA TCTTGTCCCC AGCTCTCCTC
  AGGCACCATG ATACAAGCAG                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss136097984	ENSMUSSNP5973472	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321026829	CHEV_3_151432344	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47589538					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151475017 () rs orientation: forward

Symbol	Name	Function Class
Rr587415	regulatory region 587415	1658 bp proximal
Rr587416	regulatory region 587416	1805 bp proximal
Rr587417	regulatory region 587417	1916 bp proximal