rs47588065 SNP Detail

Summary

• ID
  rs47588065
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101441738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGTGAGAGA CCTAGAGTTA GGAAGAAGGG AAGAACCAGC
  CGCATGCGAG TAAGACATCA ACCACTTTTC ATTACAGCTC CCTGACAGAT AGTGAGATCC
  C
  GGGGAAGAAG AGTCAGTGCC TGACTCCCCA AGATGAGATA AGCAGAGACA TCTGACCACC
  ACAGGAACCT TTAAAAAGTG ACGTGTGCCC TCGTAACGG                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss135548198	ENSMUSSNP854995	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs47588065					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101441738 () rs orientation: forward

Symbol	Name	Function Class
Gm33162	predicted gene, 33162	within coordinates
Gm65570	predicted gene, 65570	96 bp upstream
Gm65575	predicted gene, 65575	1445 bp upstream
Rr582075	regulatory region 582075	736 bp distal
Rr582076	regulatory region 582076	1870 bp proximal