rs47583986 SNP Detail

Summary

• ID
  rs47583986
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129084859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACAAGAAT CGGGATGTGT
  CACAAGCACA GTGGCTCCCC TGACTTTACT AGTGGTGATG TCAGGTGTCA TTTTGCAACC
  TGTAACAGAG TCCTAAGTAA CATCTTACTT CTAAAATCCA GCATAAAGAT GAGGAAATTC
  ACTGAGTTAT TTGGAAAACA AAAAACAAAA AAACAATAAC CAAAAAACCC TACACGCCCC
  R
  TCACAAGGAA ATATTGCATA CATCACTCTG TATGGTAGAC ATTTGAAGTC ATTAAAAGTC
  AAGTTACTGA GCTGGGGAGA TGGCCTGTTG TGCCATACAA GTGTGGGCCT GCACTTAGCA
  CCCCAGGACC CCTATAGGGA AGGAAGCCAG GTATCGTAGT ACATGTTAGT AATGCCGGTG
  CTCCTGTGGG GAAATGGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147584209	ENSMUSSNP6245150	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47583986					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129084859 () rs orientation: forward

Symbol	Name	Function Class
Rr373844	regulatory region 373844	within coordinates
Rr564887	regulatory region 564887	1008 bp distal
Rr564888	regulatory region 564888	88 bp distal
Rr564889	regulatory region 564889	71 bp proximal
Rr564890	regulatory region 564890	810 bp proximal
Rr564891	regulatory region 564891	1699 bp proximal
Rr564892	regulatory region 564892	1714 bp proximal