rs47582973 SNP Detail

Summary

• ID
  rs47582973
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105100729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGCTCCA TGGAAGGGGC
  TTGCTTCTCA GATGGCGATG TGACTCTTTC AGCACCTCAG ATCTCAGTTC CTGGAACCAG
  ACACTGGATC ACAAGGGGAC CCTCATTCCG CCTCCTCCTT TTTTAATGAT GTGCATTCTG
  AGTTTGGGCA AAGGACATCT AAATGCTTTC TACCACGTTT GCTGGACTCA GCCACTCAGG
  R
  ATGAGTCACC CTAGGGACAT CATACCTCAC TATGTGAGGC TTTCCCCGAG TAAGTTGGAA
  CCTGCAGAGG TCTTCAAGCA GCACCCACTG TGCTCAGAAG TTCTGTCCAG GATGTTTCTG
  CTCAACAGAG AGAGAGAGAA CTTCTATTCA CTTCCAATCT TCATCACAGG GGATGGCTAT
  GGGAACATGT CCAGGAAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60430583	NES15931877	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs47582973					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60430583	NES15931877	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105100729 () rs orientation: forward

Symbol	Name	Function Class
Rr582682	regulatory region 582682	1212 bp distal