rs47580835 SNP Detail

Summary

• ID
  rs47580835
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:22537939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTAGATA TCTGGGTTGT
  TTTTTTTTTT AAAATACACC AAGGGCCTTT TTCCTGTTGA GGTACTACAG GTCCAATAGA
  GAGTCACATG CATACTAGGG ACCACTCTAC CTCTGAGCTG TGTCTTATCC CTTTGTTTTT
  TAATAAAGGT TCTTGCTGTG TAACTGTGTA GCCTTAAACT CTTGTTTCTC TTGAGTACTG
  S
  GATCAGAGGT GTGTATCAAT AAACCTGGCA ATAAATACTC TGAGGAGAAA GTAATCATAC
  TTTAAAGCTT TACTTTAGGA AATATTGGGA GCAGCATTGC TGCTCTATAC CCTGTAAGGT
  TGTGCCATCC ATGCTGTCTG CAAAGGAGCT GAGTGGTCTC TTTGTCTTTC TTTTCTCTTA
  CCTGAGCAGT CTCAAGTCAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss60870855	NES15982525	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C		G	C	C		C
ss321765823	CHEV_6_22487940	CHEVERUD	SCREENING_POP	f	SNP											C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs47580835					SNP	C	C	C	C	C	C	G	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60870855	NES15982525	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:22537939 () rs orientation: forward

Symbol	Name	Function Class
Rr627119	regulatory region 627119	510 bp distal
Rr627120	regulatory region 627120	454 bp distal