rs47580699 SNP Detail

Summary

• ID
  rs47580699
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:143746689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTTGAGAA GACCTGGATT TCTGTGACTG AGTCATTACT
  TGGCACCACC CCTTTCATGT CAAGATGGGA CACCAAGGAC ATAAACCACA GCAGCCCTTA
  Y
  CCAAAAACGA CCAACATGCA TACAGACAAG CCGTTCAGTT CTACATTCAG ATATCTTAGA
  TATGAGGTCT AATTTCTTGA TAGGAGTATA TCTGTGCTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147774502	ENSMUSSNP4275967	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320535030	CHEV_2_143730505	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47580699					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:143746689 () rs orientation: forward

Symbol	Name	Function Class
Rr566332	regulatory region 566332	613 bp distal
Rr566333	regulatory region 566333	303 bp proximal