rs47580587 SNP Detail

Summary

• ID
  rs47580587
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:24376351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACCAGGTC CTTTGGACTT
  TTCCGTGACG CACGAAGGAG CTGACACAGC TGGATGACAC CGGAAATGGA TCACTGCACC
  CGCCCTCCTG GCTACCTGTC TTTTGATCAG TGATTTTACT CTGTGTGCCT GCAATGCTCC
  TCATTATTAG TTCTGCTTAC TGGAAGACCT AACTGCTGCC TGCTGCAGTC TGCTGAGGAA
  Y
  GCCTTAGAGC TGTCTGCCAG CACTCAGCTT CAGGAGCTGC TGTTCCCACT CCTCGGGGCT
  TTGCTGTACT GCCTGAGGCC ATCCTTGAGG CCCTGCTTCA GAGCCTCTTT CAAGCCTGCC
  CTGCTTCTAA TTATCACACT TGAGCTCTCT GTAACCCCAG AGTGGCTACT ATGCTACCTT
  CCATGGTTCC TAGCAGTAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60379274	NES15877954	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47580587					SNP	T	T	T	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60379274	NES15877954	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:24376351 () rs orientation: forward

Symbol	Name	Function Class
Naaladl2	N-acetylated alpha-linked acidic dipeptidase-like 2	Intron
Rr574259	regulatory region 574259	477 bp distal