rs47580153 SNP Detail

Summary

• ID
  rs47580153
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113600493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CAGCACTCTG GAGTCAGAGG CAGGAGATCA CTCTTAAGTT
  TGAAGCTGGT TTGGTCTGTA CACGGAATTC CAGACCAGCC AGGGGGAAAC AATGCTACCC
  A
  AAAAAAAAAA AAAAAAAAAA TCCAACTGCC CTTGGTCCCT GTTCTCTGGA GTCTGAGGCA
  GGGAGATCTT TGAGTTCAGG ACAAGCCGGA TATACATAAT G                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss133564911	ENSMUSSNP5490995	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47580153					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113600493 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17851	CpG island 17851	139 bp proximal
Rr636555	regulatory region 636555	49 bp proximal
Tssr58233	transcription start site region 58233	456 bp upstream
Tssr58234	transcription start site region 58234	516 bp upstream
Tssr58235	transcription start site region 58235	594 bp upstream
Tssr58236	transcription start site region 58236	1135 bp upstream
Tssr62461	transcription start site region 62461	within coordinates
Vhl	von Hippel-Lindau tumor suppressor	462 bp upstream