rs47575931 SNP Detail

Summary

• ID
  rs47575931
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119074997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CATTTCTGTT TTTTACAGCG TAGGATATCC CAGGTAATGT
  CCTAGAAGTC CTTTATGTCA TCATTTATGC GAAGACTCTT TCCAAATAAA GTCGTATTCA
  W
  AGGTTCTAGA AGTTCTGTGG GTGTAAGGAT GGGGGCCGTC CAGCCCATCT TTAGCAGGAA
  TCCATCTTTG TGCTTATCTC TCAGACAGAA CCCCTAGCT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147327121	ENSMUSSNP5989655	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320474397	CHEV_2_119070252	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47575931					SNP	A	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119074997 () rs orientation: forward

Symbol	Name	Function Class
Rr563452	regulatory region 563452	1600 bp distal
Rr563453	regulatory region 563453	416 bp proximal
Spint1	serine protease inhibitor, Kunitz type 1	Intron