rs47572221 SNP Detail

Summary

• ID
  rs47572221
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:150169867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGTGAACA CTTTTTAAAA
  AATATATGTT TATGCAGCTA TTTAATTTGT ACTTAGATTT CACATCGAAA TTTCACAGGT
  TTTAAATGGC CATTTTGTGG TTTTCAACAT TAATATAGAA TTATTTCTTG GATTTCTGAA
  TATTTGATAT GAAATTCTTT TTTTCCCCTT TTGATTGAAA ATAGATTTTC TCATTCACAA
  Y
  ATCCTGATCA CAGTTTTCCC TCCCTCACAT CTCCCTGTTC TGCCAACCTC CCCTTCTATC
  TAGTTCCACT CCTTTTCTGT CTCATTTAAA GAGAACAAGA TTTACTTATT TGCATTTTAT
  GTATGCCTGT GCGCCTTGTG TGTGTAGTAC CAGGAGAGCA CAGCAGAGGG CGTCCGATGC
  CCTGGAACTA GAGGTGACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148046908	ENSMUSSNP6758946	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47572221					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150169867 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15345	CpG island 15345	1683 bp proximal
Rr398878	regulatory region 398878	1721 bp upstream
Rr605170	regulatory region 605170	76 bp proximal
Rr605171	regulatory region 605171	156 bp proximal
Rr605172	regulatory region 605172	1465 bp proximal