rs47570126 SNP Detail

Summary

• ID
  rs47570126
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78500394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGG AACACTGTGT AGGAACATGG
  R
  GGTTCTCAGA AATCTACTGA ATGAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320807517	CHEV_3_78397009	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47570126					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78500394 () rs orientation: forward

Symbol	Name	Function Class
Gm65533	predicted gene, 65533	within coordinates
Rr578423	regulatory region 578423	1430 bp proximal
Rr578424	regulatory region 578424	1849 bp proximal
Tssr33603	transcription start site region 33603	1252 bp downstream
Tssr33604	transcription start site region 33604	1322 bp downstream
Tssr33605	transcription start site region 33605	1335 bp downstream
Tssr33606	transcription start site region 33606	1350 bp downstream
Tssr33607	transcription start site region 33607	1426 bp downstream
Tssr33608	transcription start site region 33608	1484 bp downstream