rs47570046 SNP Detail

Summary

• ID
  rs47570046
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126453641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGAGGGGGTA GGATTTGTGC AGACACAGGG TCTAAGCCCA
  ACCTCATTTT GGTTCTCTCC ACTTGCATGG CTTTAACTCA AGTCTATGGG CTTGTGTGGT
  AGGCCTCTAG AGCTCACATG GGAGACCTTT GCTGTCTTTG ATCTTCTAGG CTTTTAACAT
  R
  GAAATCATTT ACCAATCCTG TAAGTAGATG CTAATCATAT TCTCACTGAG CCCGAGAAGT
  CAGTCTTCCC CTAGCCACCT CTCTCCTAAG TGCTAGAGGT GACCCAGGAA CACAAGCAAC
  TTAGCACTGA CATCAGAGCT TGGAGCTGCT GGGTCAGTTC CACAGTTTAC ACTGTGTGTA
  AAATCTAGCT GCCTCAGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss135838230	ENSMUSSNP6627097	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320947053	CHEV_3_126362910	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs47570046					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126453641 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43006	predicted gene 43006			669 bp downstream
Rr397996	regulatory region 397996			1922 bp upstream
Rr584669	regulatory region 584669			1750 bp distal
Rr584670	regulatory region 584670			845 bp distal
Rr584671	regulatory region 584671			within coordinates
Rr584672	regulatory region 584672			1870 bp proximal