rs47559499 SNP Detail

Summary

• ID
  rs47559499
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178275499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTGACATG CATCCATTGG
  TGTCTACTGT GTGCTGGACT CCAGGGCAGG CAGAAAGCTG AGGGTCGTGT CGCCTCTGGC
  CCTGGAAGGG AAGGTGAGCC ATGCTTTCGG GCTTTGTCCT AAGCTGTAGA CATGCTCTGG
  GTCCAGACCT GCCCCCTGTG ATGCCTTGAC TCTGCCTCCT GCCTGGCAAC AGTATGGTTG
  Y
  CCACCCCCAG AGGCTGCCAG GAAGGAGGAA CTGAAGAGGT CACATGACAG AAAGCATGCT
  GGTAGCTGAC AATTGCTGGT TCTCACCTCC CTCACCCCTA TCCCAGACAC CAGCTCCTCT
  GTGTTGCTTA GCTCAGTGAT GACACAGGCC ACTCTCACAG GTGTTCACCA GTGATGAGCA
  TGGGATTCTT GCTCTGGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148366698	ENSMUSSNP6679619	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss320628579	CHEV_2_178368411	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47559499					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178275499 () rs orientation: forward

Symbol	Name	Function Class
Gm40031	predicted gene, 40031	1052 bp upstream
Rr572441	regulatory region 572441	239 bp distal
Rr572442	regulatory region 572442	458 bp proximal