rs47557940 SNP Detail

Summary

• ID
  rs47557940
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:86989089 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGGGCAG TTGTTTTCTT
  GGGAAGATGA GGCTGAGCTA CGAGTTACAG ATTCTCTTTG GTCAGAAGGT GGTAGATGAG
  ATGTGGCACG GAATGTGTGT GTGCTCATGT GTGCATGCTG TGTGGGAAAA GATAGCATGG
  CCCATGGAAT TCAGTGCCGT TTGTGTTGTT CTACACTAAG ATCTCCATCT AGGTCAGTAA
  R
  ACGTTTCCTT CGCCACCATT TCCAGGCCCC CATCCCCTCA TGTCCTCTCA CTTGTCTCTC
  CTTGGATGCT AACATGGGAC AAGCTCAAGC TCACAAGGTC CCTGCTCCCC ACACAGGGAC
  ATCATCACAA ACCTGACACT CAAGGCACTG AAAATGGAAG AAGGAATCTG ATTGGTCAGG
  GGTGGGGTGG GGGGCAGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135453679	ENSMUSSNP3081586	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47557940					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86989089 () rs orientation: forward

Symbol	Name	Function Class
Kirrel1	kirre like nephrin family adhesion molecule 1	mRNA-UTR
Rr579434	regulatory region 579434	536 bp proximal
Rr579435	regulatory region 579435	621 bp proximal