rs47554705 SNP Detail

Summary

• ID
  rs47554705
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135797712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAGAGCC CAAGCTCTGG
  AGCGACAGCC CTGGACTGCA CCTCATTCTC CGCCTCTGTC CTTTAATGCT CGTGAGACTG
  GGTAGTCTGC TTGACCCCTC TGAGTCTCAC ATTCCCCGTG TGGGAAGTGA GGCTGGCCCT
  GAGAGGGATA TTTGCTCCAA ATTTAGAGGT TGAGGCAGAC AGTCTTCTGG CACAAGAGTC
  Y
  GCTCAGTTCA GATTCACCAC AGCCCAACAG TGAGGCCAGG CTCCTCCAGC CAGGTGCCTG
  GTTTCTCCCT CACTCTCCAT CTGGAATGTT CGCCCTTTCT GGAATCATAG CCTCTAAAAC
  ATTTAGACTC CATGTCTCCT CGCCTCCCGT TGCATTAAAA AAACAGAGAA AAAAAGAAAA
  AGATAACAAA GTAGAACTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147557407	ENSMUSSNP6702721	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47554705					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135797712 () rs orientation: forward

Symbol	Name	Function Class
Rr367750	regulatory region 367750	1084 bp upstream
Rr602257	regulatory region 602257	within coordinates
Rr602258	regulatory region 602258	268 bp distal
Rr602259	regulatory region 602259	352 bp proximal
Rr602260	regulatory region 602260	1286 bp proximal