rs47550937 SNP Detail

Summary

• ID
  rs47550937
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134906390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCCCCAGG TACACCCAGG
  GTGGGTCACC CAGCAGGACC CCTCCCTGGG TTGGAACAGG AAACTGTCTT CACAGCCCAC
  ATGCTTCTAC TTGGTTTATC TGAGGGTGGA CCTGTAGGTG GCCGCTACAA CTGAAGAGCA
  AAACCCCTGA CTGTATTTAA CTCCTGTCAC CTGCATCCCA CTTGTCAAAA GGATACAGAC
  Y
  AAGAGATGTC CCCCGCTTAG CTGGAGGCAG CTGGAGGAAG CCATGCAGTT ACCACTGAGG
  CCTGTAGGGG ACGGAAGCAC TGACTTCCAG GCAGCAGAGA GAAAGGAACG GTTGGTCCCC
  TCACCCCACC AAATCTCCCC CACCTTAAAC CCCTTGCTTT GGAGAGGAAT GTGGGCTGTT
  ATTAGGAAGA ACTCCCCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147540854	ENSMUSSNP63918	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47550937					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134906390 () rs orientation: forward

Symbol	Name	Function Class
Rr601942	regulatory region 601942	within coordinates
Rr601943	regulatory region 601943	57 bp proximal
Runx3	runt related transcription factor 3	1089 bp downstream