rs47550656 SNP Detail

Summary

• ID
  rs47550656
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:142844744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTCAGATG CCCTGGTAAT
  GCAGAAAACA CCCAAGATAG GGCTCAGAGC CTCAGATATT TGGACTTGGC TCCCCCCTCC
  CCCCAATAGC TCAGCACTGG GCATGAGAGC AGGCTTGAAG AGTTGGTGAG CTCTGTACTT
  CTGCTCAAAA TGAGGTCCAC GGATGGGCAG CACAGTAACC ATGTAGGTGG GACCTACAGA
  Y
  GCTCAGAACC AACAGAAATC TTAGAAGAAA CTGACGGGGG TGGGGTTGGG GGTGATATGC
  TGAAGCTGCG AGGACCTGCA GCTGAGGACA GGTAGGTAGA GCCAGATGTA CAAATATTTT
  CTGATCTGGG TTGGGGCTGG TGTCCAGCAG CTGTAAACAA GTCCCTCTAA TAATGCAGGA
  GTGGGGAAGA AAAGGCAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147773254	ENSMUSSNP3616903	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47550656					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:142844744 () rs orientation: forward

Symbol	Name	Function Class
Prdm2	PR domain containing 2, with ZNF domain	Intron
Rr604158	regulatory region 604158	593 bp proximal
Rr604159	regulatory region 604159	1859 bp proximal