rs47550104 SNP Detail

Summary

• ID
  rs47550104
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52207442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACCTGCTC AGGAGTTTGT
  AGCCACTGTC ACAACCAAAT GACATCACAG GGAGATCTGA TGTCCTCTTT CTACCGGGTC
  TGTTTATAAA GTGAAATGGC GCTCCTGTAA AAATTCACAG CTTTTACAGT CCCGGTGACC
  TTGAGTTGTG TAGGTCACTC TCTCTGTGCA GTAAAGCTGC TGTGAGGATT GACTGTCCTG
  Y
  AGGACCTCAT TCAGAAACGC TGTGAGGTCC AGTTGTCTGC ATTGTCCATG CCTTTCCCAA
  GTAGACAGGA CTCATGGTCA GCACATACCC CGACGGGCAG ACAGGTTAAC CTTCAAATTC
  AAGCTCTTTG AAGAGGTGAA GAAAGTGAGA ACCAATCATA TAAGAGGTAA TTTGGCTTCT
  GAGTATCTCG GCCGGGTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss60410058	NES15916036	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs47550104					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60410058	NES15916036	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52207442 () rs orientation: forward

Symbol	Name	Function Class
Foxo1	forkhead box O1	Intron
Rr576497	regulatory region 576497	827 bp distal
Rr576498	regulatory region 576498	350 bp distal