rs47549703 SNP Detail

Summary

• ID
  rs47549703
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153300179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCGGTTAT GACTCCTCAG
  GAGTCTGCAG ACACGTCCTC AGTTGTCATT CAGCCACTGT GATGTTTCCA GTGCATGCTC
  ACATTCTAGG CAGGTAAGGT TACGTCACTT GCTGTCTGCA ATTGTTCTTA CCCTTGGGGA
  AAATACTGCC CCCAATAAGA ATGTTCTTGA TATCAAAGCT TCTTAATATT TGGGCTGTAA
  Y
  TCATATGAAG ACATGAAAAA TCTGGCAACA GTAAAAGATT TCTAAACATA AAAAAAAAAA
  AAAAACCCAA AAACTAATTC AAAACCAAGC GTGTACTGCA CCCAAGGTGT TTGGGGCAGT
  ACTTGCCTGT GCTGTATCTA GTGGCTTCTT GGCAGCCTTG GGGTGGCGCA CACAGCGCCT
  GCACTTTGTC CCATGTGTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136109448	ENSMUSSNP2361703	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47549703					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153300179 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm32721	predicted gene, 32721			within coordinates
Gm52633	predicted gene, 52633			1560 bp upstream
Rr587708	regulatory region 587708			211 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant