rs47547889 SNP Detail

Summary

• ID
  rs47547889
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:103832742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCATCACAT CATCCCAAGA
  ATAGTCAGAC ACTCAAGAGT TGCCTCCAGA ACTCTCAGAA TTGTTATGGA CCAGGCTTTA
  GCATGGGGCA GCACTATCTA CATGTGTGCG CATGCCTTGG GGTTTCCTCA AGACGATGGC
  AGGGGTTAGG CAGGTGAGAA TTAGGTGGGC AGGTGTTCTG AGAAAGGGAC AGGGTGCTCA
  G
  GTGGCAGGAG GATATCCCTC CCCTTCTTTT GGGGTCCTGT ATGGTTACTG CTGCCATGGT
  GGTGTACCCT CCTTGTCAGT GTCTTTCTTG GATCCCAGTA TTTGAAGTTT TCCAGTTAAC
  CTAGTTGCAT TGAAATAAAA ATGAGGAGGG GAGGCCTTCC TTCGACCTTG GCGTTCTATG
  GTAGAACTCA CGGACATGAA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147141858	ENSMUSSNP735285	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs47547889					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:103832742 () rs orientation: forward

Symbol	Name	Function Class
4931422A03Rik	RIKEN cDNA 4931422A03 gene	Intron
Cpgi11988	CpG island 11988	963 bp proximal
Rr397165	regulatory region 397165	850 bp downstream
Rr562001	regulatory region 562001	1024 bp distal
Rr562002	regulatory region 562002	1098 bp distal
Rr562003	regulatory region 562003	271 bp proximal
Rr562004	regulatory region 562004	523 bp proximal
Rr562005	regulatory region 562005	582 bp proximal