rs47547649 SNP Detail

Summary

• ID
  rs47547649
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152592822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATGGGCT CCTTATAAAA
  CCCAAGGTCC CTGGGGACTT TCCATAAGCA AGTCAATTGT TTAAGGAAAA AGGAAAGGAA
  GAAAAACAGC AAGAATGACT CTATCAATAC CCAAACAGGC CTTAGGTAAG AAAAGTTTAT
  ATGGCCCTAG ATGGTATATG GATATATGTA TACAAATTAA TCATCTACTG ATGATAAATC
  M
  TAAAGAAGTT TATTTTAAAC CAGTTCTTTA GCATTGATAT AATTTTCCAC TTACTAAAGA
  TGAAAGCAAA TTTGGATATT GATCAGATGG ATCCACTTAT TTATTTTTAC ATAAAGAAAT
  CTTGGCTGAA TGTTTTATCT TGAACATAGA CCATATTCAA TGTTTTTCAA AGCTGATCAA
  TATTTTGATT TTATGTTCAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136104405	ENSMUSSNP7148993	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
ss321029047	CHEV_3_152550149	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47547649					SNP	A	A	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152592822 () rs orientation: forward

Symbol	Name	Function Class
D3Mit322	DNA Segment, Chr 3, Massachusetts Institute of Technology 322	511 bp distal
Rr587620	regulatory region 587620	306 bp distal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron