rs47547162 SNP Detail

Summary

• ID
  rs47547162
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116014435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAACCTGT AAGCCAATTA
  AACCTGTAAG CCCCAATTAA ATGCTGTCCT TTATAAAAAA TAATAATAAT AAAAATAAAA
  AGTAAAAGCA TCTCACGCGG CTGCCAGAGA TGTAACGGCC CATGCTTAAG ACTTCCTTTA
  CTTATGTTCA AACTCCCAGG AAATACCAAA CTGAGTTTTT CTACGTGCTG GATGAAATAC
  R
  TTTCAAGCCC ACTCTGGAGA CTTGAAAAAG GTGTGTGGTG ATCTCGGGTC TATCGAACAG
  GGAGGGGCGG CAGAGGAGGG AACACAGCAC ACCTCAGACA GCATCTTTAA CTGCATTACA
  CATCTGCCTG GGGCAGGCTC ACTGCTCTGA GCCACTCCTG GCACCTTGGC ATTTGCTTTG
  ATAATCGAAC ACCCCTTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss135669512	ENSMUSSNP557696	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs47547162					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116014435 () rs orientation: forward

Symbol	Name	Function Class
Rr583673	regulatory region 583673	138 bp proximal
Rr583674	regulatory region 583674	1725 bp proximal