rs47545434 SNP Detail

Summary

• ID
  rs47545434
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:55679087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTCATCG CAGAAGAATA
  TTTGGTCTAT GGGGGAGTTG TAAGAAACAT GTAAACAACA ACAACAACAA AGACCCTACT
  ATTTAATGCT CAATCAAGAG ATACAGATAT TTCCTCTGAG GGGCTTCAAA GGCAGTGCTA
  AACTTTTATG CTTGTCCCTA TGTGTTTCCA GTCTTCACAG TTGCTCCCAA TCCCGTTTAT
  Y
  AGCTTCGATT CTTTTCGAAT GACTAAAGGG TAAGTCATGG TTATTTGTCT AGGTCTTACT
  TTTAGCCCGT GGATGTAGAT TAGTATTTGA TTTTTATAAA ATCACAAAGG ATTAATATTT
  TAGTAGCTCT TTCAAACCTG TTAAACATAA AGACCAATTT TAAAGCAAAG TAAAAACAAA
  CAAACAAACA AAAAAACCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133214600	ENSMUSSNP200483	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47545434					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:55679087 () rs orientation: forward

Symbol	Name	Function Class
Rr406317	regulatory region 406317	1597 bp proximal
Rr631015	regulatory region 631015	798 bp distal
Rr631016	regulatory region 631016	1739 bp proximal