rs47545390 SNP Detail

Summary

• ID
  rs47545390
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126340849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACAATCTCC CAAAGGTTAG AAAATATCAC TTGGTCTATT
  TTTAAAGATT CATTTATACA ATATCAAACA ATACGAAATG CGTTAGTAAA TAAGCCCAAG
  T
  AAAATCTCCC TGAGTTTTCA TCTCCAGTTT GCTTGTAGCC ACATCAGAGA GAAGGGCCGG
  TTTGTAGGCG TAGGCATGTG TACCCCACAT GAATCTCTC                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss147505072	ENSMUSSNP5554311	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs47545390					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126340849 () rs orientation: forward

Symbol	Name	Function Class
Atp8b4	ATPase, class I, type 8B, member 4	Intron
Rr564346	regulatory region 564346	within coordinates
Rr564347	regulatory region 564347	514 bp proximal
Rr564348	regulatory region 564348	908 bp proximal
Rr564349	regulatory region 564349	1668 bp proximal
Tssr632	transcription start site region 632	1086 bp upstream
Tssr19934	transcription start site region 19934	136 bp upstream
Tssr19935	transcription start site region 19935	1046 bp upstream
Tssr26038	transcription start site region 26038	755 bp upstream
Tssr26039	transcription start site region 26039	752 bp downstream
Tssr26040	transcription start site region 26040	785 bp downstream
Tssr26041	transcription start site region 26041	802 bp downstream
Tssr26042	transcription start site region 26042	847 bp downstream
Tssr26043	transcription start site region 26043	910 bp downstream
Tssr26044	transcription start site region 26044	985 bp downstream
Tssr26045	transcription start site region 26045	1363 bp downstream
Tssr26046	transcription start site region 26046	1702 bp downstream