rs47544920 SNP Detail

Summary

• ID
  rs47544920
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101869745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGCCCTGCT ACAGACTGGG TGCAACAGGC TGATAAAACA
  TATACTAACA CCCATTGGGG CTAGGAGTCC TAGGTCCTGC GTTCTATTCC CAGCAACCCC
  W
  CCCTTACTCA AAAGAGTAAA GAAAACAGAA AGGGGAAGCA AGTGCCTAGT GGTATGTGCT
  GCATATGGCC TGCCTGCCTG CCTGCCTGCC CACTCTGCT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147097857	ENSMUSSNP6349201	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss320433839	CHEV_2_101879557	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47544920					SNP	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101869745 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad3	low density lipoprotein receptor class A domain containing 3	Intron
Rr367252	regulatory region 367252	12 bp upstream
Rr561615	regulatory region 561615	1751 bp distal
Rr561617	regulatory region 561617	442 bp distal
Rr561618	regulatory region 561618	within coordinates
Rr561619	regulatory region 561619	240 bp proximal
Tssr19089	transcription start site region 19089	195 bp upstream
Tssr19090	transcription start site region 19090	216 bp upstream
Tssr19091	transcription start site region 19091	246 bp upstream