rs47544353 SNP Detail

Summary

• ID
  rs47544353
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52813107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAGAAGGG TGGCTGAGAG
  TGATTAAATG ACCATCCTGA TATTACGCTC TGAAGCTGGG CTGAGACCCA AATCCAAGTC
  CAAATCTGAT CCAAGTTCCC ATGCCTAAGC GGGCCATTTA AGAAGAATCA TTATTGTTCC
  GTGTTTAAAC AAAGGCGCTA GTACCAGAAA GCCCTAAATC CTGGCTAACC AGCTCTGCAC
  R
  CTGGCTCTTC CATAAAAGGG ATGCTGCTTC AGAGGAGAAC GCATTTCCAT CTCTCAGATT
  CCTCTCTGGG AGTATCACCC CCTTCATCTT GGTCCCTTCG GGGTGTTTGA CATTTATCGT
  AATGGTGCCG CTTTGCTCCA AGAGCACTTT CGGGTTTTAA AAATACTTCA CATATTCTCA
  GTGATGGCAA ACCTTTGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135179430	ENSMUSSNP5955492	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320765861	CHEV_3_52709608	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47544353					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52813107 () rs orientation: forward

Symbol	Name	Function Class
Gm20750	predicted gene, 20750	1070 bp downstream
Rr576600	regulatory region 576600	1579 bp proximal
Rr576601	regulatory region 576601	1668 bp proximal