rs47542596 SNP Detail

Summary

• ID
  rs47542596
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17943446 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTGTGCC CAACATTACA
  AAAACAAACG AATAAACAAC TGAGAGAGGA AAGGATGTAA ATAGAGTCAC AAAAGCACTA
  GCCCCAAACA GAGTGTGCGC ACATGCCAAA CAGACACAGG GAAGTCAGGT TTTCAAGGTG
  GGTTTAAGCT CCATTGAAAC ACACATCTGT GCCTCAGTAG GTTGTTATAG CTTTGTGGAC
  R
  AGAAGCCACA GACCAGCAGT CTGTCCCAGA ACCTGGCTGC TTACACCCTT GTTGCCGTCT
  CAAACACTTC ATCCAAGAGT ACCTTTTAAG CTTTCTCATG TTTGCATTTC TGACACTTTA
  ATCTGAGCAT TCTTTGAGTA TTTTACTGAT CTGAACCAAA ATGATGATTT GTCCTCACCA
  CCTCTCAGAG CTTTGTGCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133025448	ENSMUSSNP1676821	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47542596					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17943446 () rs orientation: forward

Symbol	Name	Function Class
Rr626887	regulatory region 626887	351 bp proximal
St7	suppression of tumorigenicity 7	424 bp downstream