rs47538732 SNP Detail

Summary

• ID
  rs47538732
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68954421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGC CTGGGCCACG AGGTTGGGAC
  R
  TTATCTCGAA ACATACATAA AAAGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss135264709	ENSMUSSNP1449971	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320791806	CHEV_3_68851010	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs47538732					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68954421 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13256	CpG island 13256	1564 bp distal
Gm65005	predicted gene, 65005	721 bp downstream
Rr578119	regulatory region 578119	1956 bp distal
Rr578121	regulatory region 578121	835 bp distal
Rr578122	regulatory region 578122	1724 bp distal
Rr578123	regulatory region 578123	40 bp distal
Tssr29530	transcription start site region 29530	1952 bp downstream