rs47538568 SNP Detail

Summary

• ID
  rs47538568
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137006208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCC CAGCTGTTCC GAGAGCTCGC
  G
  ATTCCTCTGA GGCCCAAAGT GGCTG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321362843	CHEV_4_136834812	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47538568					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137006208 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15125	CpG island 15125	50 bp distal
Rr602576	regulatory region 602576	1398 bp distal
Rr602577	regulatory region 602577	within coordinates
Rr602578	regulatory region 602578	492 bp proximal
Tssr1345	transcription start site region 1345	1412 bp downstream
Tssr39739	transcription start site region 39739	1379 bp downstream
Tssr39740	transcription start site region 39740	1308 bp downstream
Tssr44110	transcription start site region 44110	298 bp downstream
Wnt4	wingless-type MMTV integration site family, member 4	Intron