rs47537199 SNP Detail

Summary

• ID
  rs47537199
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101469533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCCCCAA AATCTTTATT
  TTCATGCATA CTTTGTGAAA ACAAATTGAG ACAAAATTAA ATTCCTGTCC ACCTGAGAGA
  GAAAGACATC TTTCCCCACT GCTCTGGCAT CTGTGTGCAT GCTTTTAATC CCAAGACACT
  TCTTAACCTC TCACCCACCA TTCATCAATT TTCATCAGCT ACAGTCACTG GTCCCCACAG
  Y
  GCGCGGCAGA AGGCTGGCAC GTAGACCTGT AGAAACAGGC TTCCAGTTTC AGAGCAGAAA
  AAAATGCATT GTACTTCTCC AGCCCTGCTG GGGCAGGGGG TGGGGTGGGG GAGTGGGGGT
  GATAGAATCC TCCATTCCTT GTGGTGAATT TCCCCCAAAG TATGTGCCTG CATTTGCAAT
  GGGGAGTCTT AAAAATAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147079108	ENSMUSSNP2169878	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss320429666	CHEV_2_101479345	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47537199					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101469533 () rs orientation: forward

Symbol	Name	Function Class
Rag1	recombination activating 1	mRNA-UTR
Rr561526	regulatory region 561526	423 bp proximal
Tssr25364	transcription start site region 25364	914 bp downstream
Tssr25365	transcription start site region 25365	1038 bp downstream