rs47533384 SNP Detail

Summary

• ID
  rs47533384
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116286335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTGAGAA GCAATTTGAG
  AAGAAAAAGA ACAGTGGCTT TACTAGCTAA AGGGAACAAT GTTTACATTT TCTATGAAAA
  GATTAGCATT AATCTCACTT GAAATTTATA TTATTATTAT TGTTGTTGTT GTTATTATTT
  TAGACCAGAG TACTAAAGAA AAGGTATAAA TGTATTATTA TTATTTTAGA CCAGAGTACT
  R
  AAGAAAAGGT ATAAACGTGA GCTCACACAC TAGTCAGGCA GAACCTTCAC TGATGCACAG
  GACTTCAGGC TTCCAAACTG TCCTGGGATG CTCAAAACCC AGGCTGCTAG CCCGAAGCAC
  AGGCGTCAAA GCATCTACTC TCTGCTCGCT CTAATCGCCC AGTGTGTCAG GAGACAGAAG
  CCGATGCCGA GGCTGCTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60437136	NES15943356	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs47533384					SNP	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60437136	NES15943356	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116286335 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr583727	regulatory region 583727			1559 bp distal
Rr583728	regulatory region 583728			332 bp distal
Rtca	RNA 3'-terminal phosphate cyclase			Intron
				Noncoding-Transcript-Variant