rs47531690 SNP Detail

Summary

• ID
  rs47531690
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30173373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGCACTG TTATGACAAC
  CATTTGAAAG TACTGACTCC TGTATTGTGG CTTCGACATG ATAAATTCCC ACTTCCAGAA
  GACATCCAGC TGGTAAGACC ACTTCAGCTG CCAAAAGGAT GCTTCATAAT TCCCACATCT
  GGAATCGGTC CTCTGTCACA GCCTCATCAC TAATTTTAAC CCACGTTTTT AAAAAAATCA
  S
  TCTTATTTTT TTCCCCTAAA GTAAGACTGA AACTTTTACC CGAAGGGATT TGTAAGCGGT
  TTCACTGGAA AAGGACAATG TCTTATGCTG ATAGTAAGTC TTTGGTTTCT CAATGATTTG
  ACATTATGAA AAAATTTTAG ATGGTTTTAA AAACTTAATC CAAAGATATT TGACTTATTT
  TAAATATCCA TTTTCTGGTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss134729175	ENSMUSSNP3522931	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs47531690					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30173373 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574719	regulatory region 574719			within coordinates