rs47528114 SNP Detail

Summary

• ID
  rs47528114
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:94564766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCAA CCTCTCTTAC CTGGGGTAGG
  Y
  TGGGGGGTGG GCTGGGCTTT GGGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135506908	ENSMUSSNP165553	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss320840504	CHEV_3_94461381	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47528114					SNP	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94564766 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13486	CpG island 13486	690 bp proximal
Gm15234	predicted gene 15234	1269 bp upstream
Gm65306	predicted gene, 65306	94 bp downstream
Rr580673	regulatory region 580673	368 bp proximal
Rr580674	regulatory region 580674	929 bp proximal
Rr580675	regulatory region 580675	1331 bp proximal
Rr580676	regulatory region 580676	1403 bp proximal
Rr580677	regulatory region 580677	1507 bp proximal
Tssr34401	transcription start site region 34401	1384 bp downstream
Tuft1	tuftelin 1	Intron