rs47527415 SNP Detail

Summary

• ID
  rs47527415
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152496717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCTTAACT GCTGTCTGTG
  GCCTGCATAG CTGCTGGCCA GCACACCTCA GGGGAGCCCG GGCCCGCACG CCAACTGCTG
  GCCAGCACAC CTCTGCACGG CTGCTGGTCA GCACCTCAGG GGTTGCGGGG CTCCCGTACC
  CCTTCCTTAT GTGCAGAAAT CTTTACTGTC TTGGACATGT GCTGTGAAAC ACTTGGCTTT
  R
  TTTAACTGTG TGTGTGCACC TATCACTGGG TTTTGCTCCC TCAGCCCTCA CTGCCTCACC
  CCAAATAATC TCACTTCGGT GTCACACATA TGCACATGAG AAGGTTTCAG GTTTTAGATT
  CAAGGGTGAC ACCGAGACAC ATATAGCATA TGTTATGATA TGTATGTATG TATGTATGTA
  TGTATGTATG TATGTATTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	PWD/PhJ
ss61101173	NES16612846	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	KK/HlJ	PWD/PhJ
rs47527415					SNP	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61101173	NES16612846	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152496717 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pigk	phosphatidylinositol glycan anchor biosynthesis, class K			Intron
				Noncoding-Transcript-Variant
Rr587606	regulatory region 587606			820 bp proximal