rs47525529 SNP Detail

Summary

• ID
  rs47525529
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:4652770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T AAATCAGTCT TTCTGTAGAT CCTTCTGGGA ACTGGCAAGC
  AGGGGGATTG TTTCTTAATA GCCACTGTAT TTTCTTATGC TTCCTCCAAC CTTTTCCAAA
  C
  TAAAATTAAT TAAGACTAGA TTATATTAAG CGGAAATTTG GAAACTAAAT GGTCCATCTG
  TCTGGGTGAG AACACAAACT CAATATTATT TTTCTTCCTA A                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss132932388	ENSMUSSNP5723049	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47525529					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:4652770 () rs orientation: forward

Symbol	Name	Function Class
Gm38761	predicted gene, 38761	1784 bp upstream
Rr626043	regulatory region 626043	within coordinates
Rr626044	regulatory region 626044	142 bp proximal
Rr626045	regulatory region 626045	1337 bp proximal