rs47521856 SNP Detail

Summary

• ID
  rs47521856
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153442933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGATGGCT GGTTGTGCTG
  TGTGTGTCTC CTTATGTAGG TCGAGGTTCT CTGTGAGTGG GAAGGAAGCA GGGGCGTCCA
  GTGAAATGCG TGACACGCCA TCAGAACGGA TGAGCCCCGG GAAGGCCGTA AGCTAGAAAA
  CACTGTTGTG TATTAACATG CAATTTTTGG GGGGGGGGGT TGTGTCCCTG TTCCGTTAAC
  R
  CTTTTAGAAC AGTACATTTT GCCTAATGGT TAGTGTAACA TTGCAAATAA TCCAAAAGAT
  AAACAAACAC AAAAGCCATT TTAAGTGTAC AATTACCAAG GCTGCATCTC AAACTACTAC
  TCTTGGCCAG GGTTGAGGGA GAGACAGAGA GAATGTCTAA TCATTTTTTG TTTGTTCTAT
  GACAGTTTCA CATACTTGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136111983	ENSMUSSNP58906	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47521856					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153442933 () rs orientation: forward

Symbol	Name	Function Class
Rr587745	regulatory region 587745	262 bp distal
Rr587746	regulatory region 587746	2000 bp proximal