rs47515454 SNP Detail

Summary

• ID
  rs47515454
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:88768597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CTTTGGATTC CCGCAGGAGA AGGTGGATGC CCAGCAGATC
  AAGAAGGCTC AAGCCATCCC TGTCCTGAGT GAGCTGACCC AGCAGATCCT GAACATCTTC
  W
  CATCAAAGGA CTCATCTGCT GCATGGAATA CAACCCTCCT AGACTCATTC TGCAATGACC
  TCCACCAGCA GCTCAATGAC CTGCAAGGCT GTCTGATGCA G                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146941459	ENSMUSSNP3813828	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47515454					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88768597 () rs orientation: forward

Symbol	Name	Function Class
Ifna	interferon alpha complex region	257 bp proximal
Ifna1	interferon alpha 1	Coding-NonSynonymous
Rr595123	regulatory region 595123	843 bp proximal