rs47508455 SNP Detail

Summary

• ID
  rs47508455
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:44074822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTATCTT CCATATCTTA
  CGCTTCCAGA GGTTGGGGTG AGCCCAGAAT TTGGGGGAAC CAACATACAG GCAGTAGCAG
  GGTATCTGCT CTTTGGAGGC TGAAGGAGAG AAGTCATTTC CTCACCCTTT CCTCGTGGAG
  ACTGACGACA CTCCTTGGCT TGTGAATATT CTCACAGCAA GACTTCCTGG CTGTGCCTCT
  Y
  CTGCCTTCCT TTTACCTACA GAGACCCTTA GAATATTAAA TTTGTGCCTA ACTAGTAGCA
  CAGGATAATC TTCCGGGCAC AAAATACTTG ATCACATCTG CACAATCTGT CTCCAAAAGA
  AGGGGTATGG ATATTTCAAA AAGCCATTTA TTCAGCCTGC CATGAGGGGT ATAGAGTCAT
  GGAAGATGGT CAAGAAAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss146246466	ENSMUSSNP2576482	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss321100065	CHEV_4_44087694	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47508455					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:44074822 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14207	CpG island 14207	1755 bp distal
Gne	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	Intron
Rr591150	regulatory region 591150	1558 bp distal
Rr591151	regulatory region 591151	1825 bp distal
Rr591152	regulatory region 591152	636 bp distal
Tssr41485	transcription start site region 41485	1801 bp upstream