rs47508246 SNP Detail

Summary

• ID
  rs47508246
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115511297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGTTCAAT CCCTTGGACC
  CATATGGCAG GACGGAAGAA ACCAGCTTCT GCAAGATGTC CTCTGACCTC CCACACAAGC
  ACCCCATACA CATATCCACA AACAATCGAG CGAAACCTTA CAACTTTAAC ATAATTATTT
  CTATTAGAAT GGAAATATAA AAACTAAAAT CTTGAAGCTA CTTGAAGCCC TTATCAGGAA
  R
  CAAGGGTGGT AGTTATAAAA TTCTAAAACT TAGGACACGC TATACTCAAA GCATTATGCT
  GTCTGATGAG GCCGTGGAGT AAGGTCCAAT AAACACGCGT GATGACCAGG TAGAGTACAG
  CTCCGGTCAC CGAGCTCTGC TATCCTATAG CTGTGTGACC CAGAACAAGT TACAACTAGG
  AGTCATCTCC CTGTCCCCGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60931461	NES16196929	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47508246					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60931461	NES16196929	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115511297 () rs orientation: forward

Symbol	Name	Function Class
Gm36355	predicted gene, 36355	within coordinates
Rr636981	regulatory region 636981	322 bp proximal