rs47504623 SNP Detail

Summary

• ID
  rs47504623
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90566468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAG AAGCTGGGAG TTGTCAACCA
  Y
  GGAAGGCTTC TTGGAGGAAA GAGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60424107	NES15930452	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	T	C	T		T	C	C		C
ss320838515	CHEV_3_90463083	CHEVERUD	SCREENING_POP	f	SNP									C				T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47504623					SNP	C	C	T	C	C	T	C	T	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60424107	NES15930452	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90566468 () rs orientation: forward

Symbol	Name	Function Class
Gm57853	predicted gene, 57853	492 bp downstream
S100a7a	S100 calcium binding protein A7A	1031 bp downstream
Tssr946	transcription start site region 946	789 bp upstream
Tssr30264	transcription start site region 30264	490 bp upstream
Tssr34247	transcription start site region 34247	262 bp downstream
Tssr34248	transcription start site region 34248	280 bp downstream