rs47503259 SNP Detail

Summary

• ID
  rs47503259
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:139909162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAATAGTAGC CATCATTGAT GAGGGCGTTG CAGAAGAACC
  CTTCCCTCAT CCATGTAGCC TTGACCCCTA TGGAAAAGCA GGATTCAACC TAGGTTTTGT
  W
  TAAGTGGGAG TCAGAAAAGG TAGTTAGTCT TTAACTGTCC AAGATCAAAG ACCAAGAGCC
  AGTAGCAATC CTTGTAACTA GTATCAAGAA TGGTTTGAC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147670599	ENSMUSSNP1119879	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47503259					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:139909162 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12337	CpG island 12337	34 bp distal
Rr397340	regulatory region 397340	275 bp downstream
Rr566073	regulatory region 566073	493 bp distal
Rr566074	regulatory region 566074	1386 bp distal
Rr566075	regulatory region 566075	777 bp distal
Rr566076	regulatory region 566076	within coordinates
Tasp1	taspase, threonine aspartase 1	437 bp upstream
Tssr26542	transcription start site region 26542	1395 bp upstream
Tssr26543	transcription start site region 26543	446 bp upstream