rs47498992 SNP Detail

Summary

• ID
  rs47498992
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:103203794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGTCAGC TATTGGATGG
  ATCACAGGGC CCCCAATGGA AGAGCTAGAG AAAATACCCA AGGAGCTAAA GGGATCTGCA
  ACCCTATAGG TAGAACAACA ATATGAACTA ACCAGTACCC CAGAGCTCGT GTTTCTAGCT
  GCATATGTAG CAGAAGATGG CCTAGTCGGC TATCATTGGG AAGAGAGGCC CCTTGGTCTT
  R
  CAAACTTTAT ATGCCTAAGT ACAGGGGAAC GCCAGGGCCA AAAAGTGGGA GTGGGTGGGT
  AGGGGAGTGG GGGGGAGGGC ATGGGGGACT TTTGGTATAA CATTGGAAAT GAAAATGAGG
  AAAATACCTA ATAAAATATT TTTAAAAAAG GAAAAAAAAT CCAATTGAGT TCCTCTACTC
  ACATTCACAG ATGAGGAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147140875	ENSMUSSNP5582	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47498992					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:103203794 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Oma1	OMA1 zinc metallopeptidase			Intron
				Noncoding-Transcript-Variant
Rr596392	regulatory region 596392			179 bp distal
Rr596393	regulatory region 596393			268 bp distal
Rr596394	regulatory region 596394			302 bp proximal