rs47498502 SNP Detail

Summary

• ID
  rs47498502
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:88365658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTTTTTG GATGGAGACT
  GGGGACTGAA GAGGCACCGC AGGCCTCATT TCAGAAGGGG CAGCAGGAAC ACATCTCACT
  GTGAAGGGCT GCAGAGTCCA CAATGTCCTG TGGGCCCAAC AGTTAGCAAC TTAGGGATGA
  AATCAATGAG AGGCCTGCCA GGACACAGAG GCCCCTGGAG GAAGTGGTAG GCAGGACAGG
  Y
  CAGTGTGTCA GGGAAACATC TCCATCGAGG CTCTCCTCCC CACTGTTCAT CTCCAAGATG
  CCCCACCCTA ATACCTGCAA ACTAGCTACC CAAGTTCCAC CTGGTACCAG GCACTGAAAT
  GAGTCTGGTC CTCTCCCATC TGAACACCTG TTCAGGTATT CCATGGATAG AACTCCAGGA
  CTCAGGAGTC CAACACTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss133364918	ENSMUSSNP2032187	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs47498502					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:88365658 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Eefsec	eukaryotic elongation factor, selenocysteine-tRNA-specific			Intron
				Noncoding-Transcript-Variant
Rr633881	regulatory region 633881			within coordinates
Rr633882	regulatory region 633882			307 bp proximal