rs47496959 SNP Detail

Summary

• ID
  rs47496959
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:42029112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAGAAAAT TTTAACCATT
  TCAATATATT ATTAGAATAA GATTCAAATG AATTTCAGAA AATTCATCCT ATTGGAAACA
  AGCTTCAAGT GCACGATTTC CAATAAAGTG GGAATAAACA TTTTTCCTTT ACCTGACTGT
  TGGACGAACC AAGACTCAAG TATGGGTGGC CAGCAGATGG CAGTATAACC CCACTTTTTT
  W
  AATTCCATGG CCGCACATGG ATCTGAAAAT ACAGGCTTTT TTTTTTTTTT TTTTTTTAAA
  TTACAGTATT AATGTAAGGC AGAACTGAAA ACTAATATAT TCCACTGGTT ATGCCTTGTT
  CTCAATGCTA TGAGACAACT CCGTGAAGCG ATGGGGCTTA AGCTTATCCA CACAGCGATG
  ATCCTCCCAT ACAGATATTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135047800	ENSMUSSNP4105029	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47496959					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:42029112 () rs orientation: forward

Symbol	Name	Function Class
Rr576014	regulatory region 576014	within coordinates
Rr576015	regulatory region 576015	14 bp distal