rs47494839 SNP Detail

Summary

• ID
  rs47494839
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:39514140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTATGGA AAGCCTTGAC
  ATATTTATTT CATGCCCTTT CATGCGGGCT GCAAAGTATG TGCTGCCTGC TTTTGAGGAG
  CAGTTTGCCA GCAACACAGA ACTTAACCGA AAATCTGGGC TTTCTTTCTT TTTTTTTTTT
  CTTTTTAACA TCTCTTAAAG ATTTCATATT TGCTTTTGTT ACTACTCTCC CTCATCAGAG
  Y
  GCAAGATAAT TCAGCTGTGA AAACAAACAG CCTTCCCCTA GCACACAAGA GCAGAGTAAC
  CCCACTTTCC TGAGCCACAC GTATTCTGTT CTAATCAAGT TTCTATTATA GACCCACTAT
  GCATGAAGAA AAGTTCTCCA TTCTTACTGG AAAAAAAAAA AAAAAACTTG GATGCACTGG
  AATGTAGAGA AGCCTAACGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss134850476	ENSMUSSNP2003814	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47494839					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:39514140 () rs orientation: forward

Symbol	Name	Function Class
Gm30063	predicted gene, 30063	789 bp upstream
Rr575757	regulatory region 575757	318 bp proximal
Rr575758	regulatory region 575758	887 bp proximal
Rr575759	regulatory region 575759	1757 bp proximal