rs47491366 SNP Detail

Summary

• ID
  rs47491366
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:118977717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGCATTG ACTTTGCTCT
  GTAGTACTCT GGGCCCAGAC ATGCCTGTAA CCCTGTGGTT TCTTCCTGCA GAAGGTGACG
  GGCCGCCTCA TGTTGGCTGT GGGAGGAGCA GTGCTCGGAT CACTGCAGTT CGGCTATAAC
  ACTGGTGTCA TCAACGCCCC CCAGAAGGTA AGTGTGCTAT GCCACTCCCC ATATATACCA
  K
  CACCCACACA CATTCATGGT GCCACCTCGG TGTCCATCAT TGACATCAAC TGACCATCTT
  CCCTCCCAGC TGGAATTCTA GAATCCCAGG GCCATAGAAT GGTGCTACTG TGGTAGGCTG
  TCTTGACTGT TTCCCAAACA GCACAGACAT TTACACTGAT CAGTATAGTG GAATTTCATT
  TATATAGTAT TTGGGGCTCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147324322	ENSMUSSNP3941859	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47491366					SNP	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:118977717 () rs orientation: forward

Symbol	Name	Function Class
Rr377076	regulatory region 377076	within coordinates
Rr598496	regulatory region 598496	612 bp distal
Rr598497	regulatory region 598497	291 bp proximal
Slc2a1	solute carrier family 2 (facilitated glucose transporter), member 1	Intron
Tssr38701	transcription start site region 38701	61 bp downstream