rs47486509 SNP Detail

Summary

• ID
  rs47486509
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108706398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGGAAGAA TAGTCCGAAG
  GTCTGCAAAG CATACTGTAG TAAGATGGCC AAGTTTTGAC TCGTTTTCTT AACTGCCACT
  GCCATACCCT GAGTGTGTAG TTAGCATAAG CTGAGGCATT GAGTGGTAGC TCCAAAAACA
  CCAGGGGGCT TCGGTTGGAG TCTACTTAGG AATACTACAC ACCACTGTTG GCCTTCCATC
  K
  GGATTAAGTC AACTGTGAGT AGAAACCGAA GATAACAGTT TTGTATTCAT AATGGCCTTT
  TCATACTCCA AGTACTTTTG AGCACAGAGC CTCTTGCTTC TGACCTGGCA CTTGGAACAC
  AGATATATAT ATCTTTTGTT CTGTCCCTGG GAAACTGATA TTTGTGTAAG ACAACCACCA
  GATATTTTCT CTAATAAAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147191603	ENSMUSSNP1692491	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
ss321252974	CHEV_4_108521806	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47486509					SNP	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108706398 () rs orientation: forward

Symbol	Name	Function Class
A730015C16Rik	RIKEN cDNA A730015C16 gene	582 bp upstream
C030043A13Rik	RIKEN cDNA C030043A13 gene	1665 bp upstream
Cpgi14566	CpG island 14566	298 bp distal
Kti12	KTI12 homolog, chromatin associated	mRNA-UTR
Rr398384	regulatory region 398384	1231 bp downstream
Rr597230	regulatory region 597230	1406 bp distal
Tssr38317	transcription start site region 38317	1306 bp downstream
Tssr38318	transcription start site region 38318	1276 bp downstream
Tssr42741	transcription start site region 42741	796 bp upstream
Txndc12	thioredoxin domain containing 12 (endoplasmic reticulum)	Intron