rs47485987 SNP Detail

Summary

• ID
  rs47485987
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145121822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGTCAGA AAGCTTTTGT
  GTAAAGGGCC AGTGACTGAA TGTTTAAAAT TCTGAGCCAT ATGGGTTCTG TTGCAGGCTC
  TTAGCTATGG CACTGTACTG TGAACCCAGT CACAGACAAC AATGAATGAA TGAGCCTGGC
  TGTTTCCCGT GAAACTTTAT TTATAAAAAC AGACAGTGGG CATGAATGGG CCGCCGGCTG
  Y
  AGTGTCTCTT CCTGCTCTGC CATGTTATAG TTGTTCTAGG ATGTGGCAGC TTTCTTGTGT
  CTGTCTTATG TGCACCCTGT TTTATTAATC TTTTGTCATT AACAAAAAAG CAATGAACAC
  AAATATGATT TCTCTGTATC TTAGTTTCAA ATCCAAAAAC CAATTCAAGT TAGCAGGCAG
  GTAGTGCTGC CACGGGTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136038383	ENSMUSSNP6048763	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321008279	CHEV_3_145079031	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47485987					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145121822 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530034A14Rik	RIKEN cDNA 9530034A14 gene			within coordinates
Col24a1	collagen, type XXIV, alpha 1			Intron
				Noncoding-Transcript-Variant
Rr586779	regulatory region 586779			1847 bp proximal
Rr586780	regulatory region 586780			1967 bp proximal