rs47483261 SNP Detail

Summary

• ID
  rs47483261
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152497163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACTCTAGC TCCAAGGGAT
  CCAATACTCT CTTCTGGATT CTACAGGCAC CTGCATGAAT GTGCTGCACA AAAACGCACA
  TGGGCACACA ATACAGGTAG ATTTAAAAAT TATATAAAAG AAAACCCCAC ACTCCACAGA
  ATCAGCTAAG CAGGGCTCAT AGGGGCTCAC AGAGCCTGAA GCAGCGATCT TGGAGCCTGC
  R
  TGGGTCTCTG CTAGGTCCTC TGCATATGTG TTATGGTTGT GTAGCTTGGT GTTCTCGTGG
  GACTCCTAAC AGTGGGAGTG GGAGGTGTCT CTGACTCCTT CCCCAGCTTC TGAGACCCTT
  CTCCTCTGAC TGGATTGCCA CCTCCAGCCT TACTATGAGG TTCTGTGCCT AGTCTTGTTG
  TAACGCATGT TCAGTTGATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss147970956	ENSMUSSNP6112575	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320562932	CHEV_2_152480979	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs47483261					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152497163 () rs orientation: forward

Symbol	Name	Function Class
1700030C14Rik	RIKEN cDNA 1700030C14 gene	913 bp upstream
Rr374088	regulatory region 374088	1268 bp downstream
Rr567410	regulatory region 567410	1672 bp distal
Rr567411	regulatory region 567411	902 bp distal
Rr567412	regulatory region 567412	401 bp distal
Rr567413	regulatory region 567413	611 bp proximal
Tssr26849	transcription start site region 26849	984 bp upstream
Tssr26850	transcription start site region 26850	977 bp upstream
Tssr26851	transcription start site region 26851	939 bp upstream
Tssr26852	transcription start site region 26852	910 bp upstream