rs47480221 SNP Detail

Summary

• ID
  rs47480221
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127762706 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACGTCAGT TTGACCCATG
  TGCTCGGGCA GAACATTATG GTAACAGGGA CTTGTGGTGC ATTGTGGGAC ATACCGGAAG
  CAGAGAGGTC TTGCACCGAC TTTCTCCCGT GCCACCTCAG TTCCCCTTGG GTTCCTACCC
  CATGCTGGGG CGCTGCTCAC ATTTGCGCTG GGGCTTCCCC ACTCGTGCGA ATTCCACCTG
  R
  AAATTCCCTC ACGGACACAC CCAGAGTCTG TGCCGCACCG GCCTCCCAGG GATTCTAAAT
  GCAATCAAGC TGGCAGTGAA GACGATCCAC CACACATTTA GGATCAAGTT ATTTCTGTGC
  CGAACGCAGG CAGATTTTTA AGATCTTGTC ATTATCTTTT TAATCATACC AGTATGAAAA
  CCATTTACAG GAGTTTATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135876638	ENSMUSSNP2642129	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320958784	CHEV_3_127671975	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47480221					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127762706 () rs orientation: forward

Symbol	Name	Function Class
Gm35667	predicted gene, 35667	1864 bp upstream
Gm65460	predicted gene, 65460	within coordinates
Rr52	regulatory region 52	924 bp proximal
Rr584913	regulatory region 584913	1917 bp proximal